PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G273500.1.p
Common NameGLYMA_02G273500, LOC100807296
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 880aa    MW: 98845.5 Da    PI: 6.8439
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G273500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.85.4e-1156130289
                 FAR1   2 fYneYAkevGFsvrksksk.kskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          fY eY+k+vGFs +       s+ +g  + r+fvC +e ++++  ++              C+a+++++++ ++kw+vtk+ ++H+H+l
  Glyma.02G273500.1.p  56 FYIEYGKRVGFSCKAGLYGgCSTADGANMYREFVCGREDSKRKPPES--------------CNAMIRIEQKGQNKWVVTKFIKDHSHSL 130
                          9************9987651568999**********99988887777..............**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-756130IPR004330FAR1 DNA binding domain
PfamPF105517.1E-29273365IPR018289MULE transposase domain
PROSITE profilePS5096611.263551587IPR007527Zinc finger, SWIM-type
PfamPF044344.2E-11551585IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MGEGSDHQAM ADNGNAESSE GGVSSAENNS GSHVRVGVSE PYVGREFDSE DAAKAFYIEY  60
GKRVGFSCKA GLYGGCSTAD GANMYREFVC GREDSKRKPP ESCNAMIRIE QKGQNKWVVT  120
KFIKDHSHSL GNLSKVHNIR PRKPFSSVGR TMPETYQGVG LVPSGVMYVS MDKNCIPTKN  180
IQGIKNIPAA AAVAETNQPV KSPTMMNYAV RPPSRKRTLG KDAQNLLEYF KKMQAENPGF  240
FYAIQLDEDN HMSNVFWADA RSRTSYSHFG DAVTLDTTYR INQYGVPFAP FTGVNHHGQM  300
ILFGCALLLD DSEASFVWLF KTFLTAMNDR YPVSITTDQD RAIQTAVSQV FPQTRHCISK  360
WHVLREGHEK LAHVCNMHPN FQIELYNCIN LTETIEEFDS SWNFIINKYE LTKNDWLQSL  420
YSARAQWVPA YFRDSFFAAI SPNQGFDGSY FYGFVNHQTT LPLFFRQYEQ ALECWFEKEL  480
ESDYETICTT PVLKTPSPME KQAANLYTRK IFSKFQEELV ETFAYTANRI EEDGENSIFR  540
VAKFEDDQKA YVVTLNLSEL RANCSCQMFE YSGILCRHVL TVFTVTNVLT LPSHYILKRW  600
TRNAKSSAGS VELAGESLGH ESLTSRYSNL CWEAIKYAEE GALTVEIYDT AISALRESGK  660
KISFMRRSVA KVAPPSHPAS GTAYDDRKSP TSTVDTNPLL WPLQDETTQR FNLNDASTPV  720
QSVADLNLPQ MTPVSLQRDD GPPENMVVYP CLKSLTWVME NRNSTPGNRV AVISLKLQDY  780
SRIPSTESEV KFNLSKVSLE PLFNHMVNIS DQLSTPTRKF AVLNLKLPVA ETTSGASEVK  840
FQVSKDTLGA VLRSMAYIRE QLLGPGDAQT EPLSKRPRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352270.0AC235227.1 Glycine max strain Williams 82 clone GM_WBb0025G03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518461.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_006575596.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLI1JIP90.0I1JIP9_SOYBN; Uncharacterized protein
STRINGGLYMA02G44110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3